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AbstractAbstract
[en] The concept of self-consistent J coupling evaluation exploits redundant structure information inherent in large sets of 3J coupling constants. Application to the protein Desulfovibrio vulgaris flavodoxin demonstrates the simultaneous refinement of torsion-angle values and related Karplus coefficients. The experimental basis includes quantitative coupling constants related to the polypeptide backbone φ torsion originating from a variety of heteronuclear 2D and 3D NMR correlation experiments, totalling 124 3J(HN,Hα), 129 3J(HN,C'), 121 3J(HN,Cβ), 128 3J(C'i-1,Hαi), 121 3J(C'i-1,C'i), and 122 3J(C'i-1,Cβi). Without prior knowledge from either X-ray crystallography or NMR data, such as NOE distance constraints, accurate φ dihedral angles are specified for 122 non-glycine and non-proline residues out of a total of 147 amino acids. Different models of molecular internal mobility are considered. The Karplus coefficients obtained are applicable to the conformational analysis of φ torsions in other polypeptides
Primary Subject
Source
Copyright (c) 1999 Kluwer Academic Publishers; Country of input: International Atomic Energy Agency (IAEA)
Record Type
Journal Article
Journal
Journal of Biomolecular NMR; ISSN 0925-2738;
; v. 14(1); p. 1-12

Country of publication
AMINES, AMINO ACIDS, AZOLES, BACTERIA, CARBOXYLIC ACIDS, ELECTROMAGNETIC RADIATION, HETEROCYCLIC ACIDS, HETEROCYCLIC COMPOUNDS, IONIZING RADIATIONS, MAGNETIC RESONANCE, MICROORGANISMS, ORGANIC ACIDS, ORGANIC COMPOUNDS, ORGANIC NITROGEN COMPOUNDS, PEPTIDES, PROTEINS, PYRROLES, PYRROLIDINES, RADIATIONS, RESONANCE, SULFATE-REDUCING BACTERIA
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